Generate research ideas from PDFs using InfraNodus GraphRAG content gap analysis
This template can be used to generate research ideas from PDF scientific papers based on the content gaps found in text using the InfraNodus knowledge graph GraphRAG knowledge graph representation.
Simply upload several PDF files (research papers, corporate or market reports, etc) and the template will generate a research question, which will then be sent as an AI prompt to the InfraNodus GraphRAG system that will extract the answer from the documents.
As a result, you find the gap in a collection of research papers and bridge it in a few seconds .
The template is useful for:
- advancing scientific research
- generating AI prompts that drive research further
- finding the right questions to ask to bridge blind spots in a research field
- avoiding the generic bias of LLM models and focusing on what's important in your particular context
Using Content Gaps for Generating Research Questions
Knowledge graphs represent any text as a network: the main concepts are the nodes, their co-occurrences are the connections between them.
Based on this representation, we build a graph and apply network science metrics to rank the most important nodes (concepts) that serve as the crossroads of meaning and also the main topical clusters that they connect.
Naturally, some of the clusters will be disconnected and will have gaps between them. These are the topics (groups of concepts) that exist in this context (the documents you uploaded) but that are not very well connected.
Addressing those gaps can help you see which groups of concepts you could connect with your own ideas. This is exactly what InfraNodus does: builds the structure, finds the gaps, then uses the built-in AI to generate research questions that bridge those gaps.

How it works
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Step 1: First, you upload your PDF files using an online web form, which you can run from n8n or even make publicly available.
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Steps 2-4: The documents are processed using the Code and PDF to Text nodes to extract plain text from them.
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Step 5: This text is then sent to the InfraNodus GraphRAG node that creates a knowledge graph, identifies structural gaps in this graph, and then uses built-in AI to research questions, which are then used as AI prompts.
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Step 6: The research questino is sent to the InfraNodus GraphRAG system that represents the PDF documents you submitted as a knowledge graph and then uses the research question generated to come up with an answer based on the content you uploaded.
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Step 7: The ideas are then shown to the user in the same web form.
Optionally, you can derive the answers from a different set of papers, so the question is generated from one batch, but the answer is generated from another.
If you'd like to sync this workflow to PDF files in a Google Drive folder, you can copy our Google Drive PDF processing workflow for n8n.
How to use
You need an InfraNodus GraphRAG API account and key to use this workflow.
- Create an InfraNodus account
- Get the API key at https://infranodus.com/api-access and create a Bearer authorization key.
- Add this key into the InfraNodus GraphRAG HTTP node(s) you use in this workflow.
- You do not need any OpenAI keys for this to work.
Optionally, you can change the settings in the Step 4 of this workflow and enforce it to always use the biggest gap it identifies.
Requirements
- An InfraNodus account and API key
Note: OpenAI key is not required. You will have direct access to the InfraNodus AI with the API key.
Customizing this workflow
You can use this same workflow with a Telegram bot or Slack (to be notified of the summaries and ideas).
You can also hook up automated social media content creation workflows in the end of this template, so you can generate posts that are relevant (covering the important topics in your niche) but also novel (because they connect them in a new way).
Check out our n8n templates for ideas at https://n8n.io/creators/infranodus/
Also check the full tutorial with a conceptual explanation at https://support.noduslabs.com/hc/en-us/articles/20454382597916-Beat-Your-Competition-Target-Their-Content-Gaps-with-this-n8n-Automation-Workflow
Also check out the video introduction to InfraNodus to better understand how knowledge graphs and content gaps work:
For support and help with this workflow, please, contact us at https://support.noduslabs.com
Generate Research Ideas from PDFs using Infranodus, GraphRAG & Content Gap Analysis
This n8n workflow automates the process of extracting text from PDF documents, enriching it with GraphRAG (Graph-based Retrieval Augmented Generation) and Infranodus for content gap analysis, and then generating research ideas based on the combined insights. It simplifies the discovery of new research avenues and helps identify gaps in existing knowledge.
What it does
- Triggers on Form Submission: The workflow starts when a user submits a form. This form is designed to accept a PDF file and potentially other parameters for the analysis.
- Extracts Text from PDF: It takes the submitted PDF file and extracts its textual content. This step prepares the document for further processing.
- Processes Text with GraphRAG (via HTTP Request): The extracted text is then sent to an external service (likely a GraphRAG endpoint) via an HTTP request. This service is expected to process the text, identify key entities, relationships, and concepts, and potentially generate initial insights or a knowledge graph representation.
- Processes Text with Infranodus (via HTTP Request): Concurrently or sequentially, the text is also sent to another external service (likely an Infranodus API) via a separate HTTP request. Infranodus specializes in text network analysis and content gap identification, providing a different perspective on the document's content.
- Combines and Analyzes Results (via Code Node): A Code node is used to combine and further analyze the outputs from both the GraphRAG and Infranodus services. This custom logic will synthesize the information, identify patterns, and pinpoint potential research ideas and content gaps.
- Generates Research Ideas: Based on the combined analysis, the workflow generates a list of research ideas, potentially highlighting areas where more research is needed or where new connections can be made.
- Outputs Results: The final research ideas and any relevant insights are presented as the output of the workflow.
Prerequisites/Requirements
- n8n Instance: A running n8n instance to host and execute the workflow.
- External GraphRAG Service: Access to an API endpoint for a GraphRAG (Graph-based Retrieval Augmented Generation) service. This service is crucial for extracting structured knowledge from the PDF content.
- External Infranodus Service: Access to an API endpoint for Infranodus. This service is used for text network analysis and content gap identification.
- API Keys/Authentication: Depending on your GraphRAG and Infranodus service configurations, you may need API keys or other authentication credentials configured in n8n's HTTP Request nodes.
Setup/Usage
- Import the Workflow: Download the provided JSON and import it into your n8n instance.
- Configure the "On Form Submission" Trigger:
- Activate the workflow.
- Note the webhook URL provided by the "On form submission" node. This URL will be used to submit your PDF files.
- Configure the "HTTP Request" Nodes:
- GraphRAG HTTP Request: Update the URL to point to your GraphRAG service's API endpoint. Configure any necessary headers (e.g.,
Content-Type,Authorization) and the request body to send the extracted PDF text. - Infranodus HTTP Request: Update the URL to point to your Infranodus service's API endpoint. Configure any necessary headers and the request body to send the extracted PDF text.
- GraphRAG HTTP Request: Update the URL to point to your GraphRAG service's API endpoint. Configure any necessary headers (e.g.,
- Customize the "Code" Node:
- The "Code" node contains custom JavaScript logic to process the outputs of the GraphRAG and Infranodus services. You will likely need to modify this code to fit the exact structure of the data returned by your external services and to implement your specific content gap analysis and research idea generation logic.
- Run the Workflow:
- Once configured, you can test the workflow by submitting a PDF file to the webhook URL provided by the "On form submission" node.
- Observe the execution in n8n to ensure all steps are running as expected and to review the generated research ideas.
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